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公开(公告)号:US11008612B2
公开(公告)日:2021-05-18
申请号:US16123140
申请日:2018-09-06
Applicant: Life Technologies Corporation
Inventor: Joseph Beechem , Theo Nikiforov , Vi-En Choong , Xinzhan Peng , Guobin Luo , Cheng-Yao Chen , Michael Previte
IPC: C12Q1/6869 , C07H19/20 , C12N9/12 , C12N9/96 , C12Q1/6818 , G01N33/58 , G01N21/64
Abstract: Provided herein are systems and methods for nucleotide incorporation reactions. The systems comprise polymerases having altered nucleotide incorporation kinetics and are linked to an energy transfer donor moiety, and nucleotide molecules linked with at least one energy transfer acceptor moiety. The donor and acceptor moieties undergo energy transfer when the polymerase and nucleotide are proximal to each other during nucleotide binding and/or nucleotide incorporation. As the donor and acceptor moieties undergo energy transfer, they generate an energy transfer signal which can be associated with nucleotide binding or incorporation. Detecting a time sequence of the generated signals, or the change in the signals, can be used to determine the order of the incorporated nucleotides, and can therefore be used to deduce the sequence of the target molecule.
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公开(公告)号:US10676724B2
公开(公告)日:2020-06-09
申请号:US16270129
申请日:2019-02-07
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Peter Vander Horn , Daniel Mazur , Theo Nikiforov , Mindy Landes , Eileen Tozer
IPC: C12N9/12 , C12Q1/6869 , C12Q1/686
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, modified polymerases and biologically active fragments thereof are provided that allow for nucleic acid amplification. In some aspects, the disclosure provides modified polymerases having lower systematic error as compared to a reference polymerase. In one aspect, the disclosure relates to modified polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In some aspects, the disclosure relates to modified polymerases useful for the generation of nucleic acid libraries or nucleic acid templates. In some aspects, the disclosure relates to the identification of homologous amino acid mutations that can be transferred across classes or families of polymerases to provide novel polymerases with altered properties.
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公开(公告)号:US20200002688A1
公开(公告)日:2020-01-02
申请号:US16270129
申请日:2019-02-07
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Peter VANDER HORN , Daniel Mazur , Theo Nikiforov , Mindy Landes , Eileen Tozer
IPC: C12N9/12 , C12Q1/686 , C12Q1/6869
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, modified polymerases and biologically active fragments thereof are provided that allow for nucleic acid amplification. In some aspects, the disclosure provides modified polymerases having lower systematic error as compared to a reference polymerase. In one aspect, the disclosure relates to modified polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In some aspects, the disclosure relates to modified polymerases useful for the generation of nucleic acid libraries or nucleic acid templates. In some aspects, the disclosure relates to the identification of homologous amino acid mutations that can be transferred across classes or families of polymerases to provide novel polymerases with altered properties.
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公开(公告)号:US10508306B2
公开(公告)日:2019-12-17
申请号:US16123823
申请日:2018-09-06
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Jason Myers , Zhoutao Chen , Devin Dressman , Theo Nikiforov
IPC: C12P19/34 , C12Q1/6874 , C12Q1/6806 , C12Q1/6869
Abstract: In some embodiments, methods for obtaining sequence information from a nucleic acid template linked to a support include hybridizing a first primer to a template strand linked to a support, sequencing a portion of the nucleic acid template, thereby forming an extended first primer product that is complementary to a portion of the nucleic acid template, In some embodiments, the method further includes introducing a nick into a portion of the template strand that is hybridized to the extended first primer product, degrading a portion of the template strand from the nick using a degrading agent, where a portion of the extended first primer remains hybridized to an undegraded portion of the template strand, and sequencing at least some of the single-stranded portion of the extended first primer by synthesis.
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公开(公告)号:US10093972B2
公开(公告)日:2018-10-09
申请号:US15166372
申请日:2016-05-27
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Theo Nikiforov , Daniel Mazur , Xinzhan Peng , Tommie Lloyd Lincecum , Yuri Belosludtsev , Howard Reese , Dmitriy Gremyachinskiy , Roman Rozhkov , John Mauro , Joseph Beechem , Eric Tulsky , Imad Naasani , Kari Haley , Joseph Treadway
IPC: C07K14/00 , C12Q1/6869 , C07H19/20 , C12N9/12 , C12N9/96 , C12Q1/6818 , G01N33/58 , G01N21/64
Abstract: Disclosed herein are conjugates comprising a biomolecule linked to a label that have biological activity and are useful in a wide variety of biological applications. For example, provided herein are polymerase-nanoparticle conjugates including a polymerase linked to a nanoparticle, wherein the conjugate has polymerase activity. Such conjugates can exhibit reduced aggregation and improved stochiometries wherein the average biomolecule:nanoparticle ratio approaches or equals 1:1. Also disclosed herein are improved methods for preparing such conjugates, and methods and systems for using such conjugates in biological applications such as nucleotide incorporation, primer extension and single molecule sequencing.
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公开(公告)号:US10081837B2
公开(公告)日:2018-09-25
申请号:US15730536
申请日:2017-10-11
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Jason Myers , Zhoutao Chen , Devin Dressman , Theo Nikiforov
IPC: C12P19/34 , C12Q1/6874 , C12Q1/6806
CPC classification number: C12Q1/6874 , C12Q1/6806 , C12Q1/6869 , C12Q2521/307 , C12Q2521/325 , C12Q2525/125 , C12Q2535/119 , C12Q2565/518
Abstract: In some embodiments, methods for obtaining sequence information from a nucleic acid template linked to a support include hybridizing a first primer to a template strand linked to a support, sequencing a portion of the nucleic acid template, thereby forming an extended first primer product that is complementary to a portion of the nucleic acid template, In some embodiments, the method further includes introducing a nick into a portion of the template strand that is hybridized to the extended first primer product, degrading a portion of the template strand from the nick using a degrading agent, where a portion of the extended first primer remains hybridized to an undegraded portion of the template strand, and sequencing at least some of the single-stranded portion of the extended first primer by synthesis.
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公开(公告)号:US09932573B2
公开(公告)日:2018-04-03
申请号:US15401757
申请日:2017-01-09
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Theo Nikiforov
CPC classification number: C12Q1/6869 , C07H19/20 , C12N9/1241 , C12N9/1252 , C12N9/96 , C12Q1/6818 , C12Y207/07 , C12Y207/07007 , G01N21/6428 , G01N33/582 , G01N2021/6432
Abstract: Disclosed herein are conjugates comprising a biomolecule linked to a label that have biological activity and are useful in a wide variety of biological applications. For example, provided herein are labeled polymerase conjugates including a polymerase linked to one or more labels, wherein the conjugate has polymerase activity. Such conjugates can exhibit enhanced biological activity and/or superior detectability as compared to conventional labeled polymerases. Also disclosed herein are improved methods for preparing such conjugates, and methods and systems for using such conjugates in biological applications such as nucleotide incorporation, primer extension and single molecule sequencing.
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公开(公告)号:US09822411B2
公开(公告)日:2017-11-21
申请号:US15423744
申请日:2017-02-03
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Jason Myers , Zhoutao Chen , Devin Dressman , Theo Nikiforov
CPC classification number: C12Q1/6874 , C12Q1/6806 , C12Q1/6869 , C12Q2521/307 , C12Q2521/325 , C12Q2525/125 , C12Q2535/119 , C12Q2565/518
Abstract: In some embodiments, methods for obtaining sequence information from a nucleic acid template linked to a support include hybridizing a first primer to a template strand linked to a support, sequencing a portion of the nucleic acid template, thereby forming an extended first primer product that is complementary to a portion of the nucleic acid template, In some embodiments, the method further includes introducing a nick into a portion of the template strand that is hybridized to the extended first primer product, degrading a portion of the template strand from the nick using a degrading agent, where a portion of the extended first primer remains hybridized to an undegraded portion of the template strand, and sequencing at least some of the single-stranded portion of the extended first primer by synthesis.
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公开(公告)号:US09255258B2
公开(公告)日:2016-02-09
申请号:US14108166
申请日:2013-12-16
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Peter Vander Horn , Cheng-Yao Chen , Guobin Luo , Michael Previte , Jamshid Temirov , Theo Nikiforov , Zhaohui Zhou , Hongye Sun , Yufang Wang , Stefanie Yukiko Nishimura , Hongyi Wang , Marian Peris , Barnett Rosenblum , Michael Phelan
CPC classification number: C12N9/1252 , C12Q1/68 , C12Q1/6804 , C12Q1/6818 , C12Q1/6827 , C12Q1/6869 , C12Q1/6872 , C12Y207/07007 , G01N2500/00 , C12Q2565/632 , C12Q2563/137 , C12Q2563/107 , C12Q2565/30 , C12Q2537/157
Abstract: Provided herein are compositions and systems for use in polymerase-dependent, nucleotide transient-binding methods. The methods are useful for deducing the sequence of a template nucleic acid molecule and single nucleotide polymorphism (SNP) analyses. The methods rely on the fact that the polymerase transient-binding time for a complementary nucleotide is longer compared to that of a non-complementary nucleotide. The labeled nucleotides transiently-binds the polymerase in a template-dependent manner, but does not incorporate. The methods are conducted under any reaction condition that permits transient binding of a complementary or non-complementary nucleotide to a polymerase, and inhibits nucleotide incorporation.
Abstract translation: 本文提供了用于聚合酶依赖性核苷酸瞬变结合方法的组合物和系统。 该方法可用于推导模板核酸分子和单核苷酸多态性(SNP)分析的序列。 该方法依赖于与非互补核苷酸相比,互补核苷酸的聚合酶瞬时结合时间更长的事实。 标记的核苷酸以模板依赖的方式瞬时结合聚合酶,但不包括在内。 所述方法在允许互补或非互补核苷酸与聚合酶短暂结合并且抑制核苷酸掺入的任何反应条件下进行。
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公开(公告)号:US20250163391A1
公开(公告)日:2025-05-22
申请号:US18952663
申请日:2024-11-19
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Peter Vander Horn , Cheng-Yao Chen , Guobin Luo , Michael Previte , Jamshid Temirov , Theo Nikiforov , Zhaohui Zhou , Hongye Sun , Yufang Wang , Stefanie Yukiko Nishimura , Hongyi Wang , Marian Peris , Barnett Rosenblum , Michael Phelan
IPC: C12N9/12 , C12Q1/68 , C12Q1/6804 , C12Q1/6818 , C12Q1/6827 , C12Q1/6869 , C12Q1/6872
Abstract: Provided herein are compositions and systems for use in polymerase-dependent, nucleotide transient-binding methods. The methods are useful for deducing the sequence of a template nucleic acid molecule and single nucleotide polymorphism (SNP) analyses. The methods rely on the fact that the polymerase transient-binding time for a complementary nucleotide is longer compared to that of a non-complementary nucleotide. The labeled nucleotides transiently-binds the polymerase in a template-dependent manner, but does not incorporate. The methods are conducted under any reaction condition that permits transient binding of a complementary or non-complementary nucleotide to a polymerase, and inhibits nucleotide incorporation.
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