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公开(公告)号:WO0190346A3
公开(公告)日:2002-10-10
申请号:PCT/US0116831
申请日:2001-05-23
Applicant: CALIFORNIA INST OF TECHN , WANG ZHEN-GANG , VOIGT CHRISTOPHER A , MAYO STEPHEN L , ARNOLD FRANCES H
Inventor: WANG ZHEN-GANG , VOIGT CHRISTOPHER A , MAYO STEPHEN L , ARNOLD FRANCES H
CPC classification number: G06F19/14 , C12N15/1027 , G06F19/22
Abstract: The invention relates to improved methods for directed evolution of polymers, including directed evolution of nucleic acids and proteins. Specifically, the methods of the invention include analytical methods for identifying "crossover locations" in a polymer. Crossovers at these locations are less likely to disrupt desirable properties of the protein, such as stability or functionality. The invention further provides improved methods for directed evolution wherein the polymer is selectively recombined at the identified "crossover locations". Crossover disruption profiles can be used to identify preferred crossover locations. Structural domains of a biopolymer can also be identified and analyzed, and domains can be organized into schema. Schema disruption profiles can be calculated, for example based on conformational energy or interatomic distances, and these can be used to identify preferred or candidate crossover locations. Computer systems for implementing analytical methods of the invention are also provided.
Abstract translation: 本发明涉及聚合物定向进化的改进方法,包括核酸和蛋白质的定向进化。 具体地,本发明的方法包括用于识别聚合物中的“交叉位置”的分析方法。 这些位置处的交叉链不太可能破坏蛋白质的所需性质,例如稳定性或功能性。 本发明还提供了用于定向进化的改进方法,其中聚合物在所识别的“交叉位置”选择性重组。 交叉中断配置文件可用于标识首选交叉位置。 还可以鉴定和分析生物聚合物的结构域,并将结构域组织成模式。 可以例如基于构象能量或原子间距离来计算模式中断简档,并且这些可以用于识别优选或候选交叉位置。 还提供了用于实现本发明的分析方法的计算机系统。
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公开(公告)号:AU6341101A
公开(公告)日:2001-12-03
申请号:AU6341101
申请日:2001-05-23
Applicant: CALIFORNIA INST OF TECHN
Inventor: WANG ZHEN-GANG , VOIGT CHRISTOPHER A , MAYO STEPHEN L , ARNOLD FRANCES H
Abstract: The invention relates to improved methods for directed evolution of polymers, including directed evolution of nucleic acids and proteins. Specifically, the methods of the invention include analytical methods for identifying "crossover locations" in a polymer. Crossovers at these locations are less likely to disrupt desirable properties of the protein, such as stability or functionality. The invention further provides improved methods for directed evolution wherein the polymer is selectively recombined at the identified "crossover locations". Crossover disruption profiles can be used to identify preferred crossover locations. Structural domains of a biopolymer can also be identified and analyzed, and domains can be organized into schema. Schema disruption profiles can be calculated, for example based on conformational energy or interatomic distances, and these can be used to identify preferred or candidate crossover locations. Computer systems for implementing analytical methods of the invention are also provided.
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公开(公告)号:AU2002367636A1
公开(公告)日:2003-11-10
申请号:AU2002367636
申请日:2002-10-25
Applicant: CALIFORNIA INST OF TECHN
Inventor: VOIGT CHRISTOPHER A , WANG ZHEN-GANG , ARNOLD FRANCES H , MAYO STEPHEN L
Abstract: The invention relates to improved methods for directed evolution of polymers, including directed evolution of nucleic acids and proteins. Specifically, the methods of the invention include analytical methods for identifying "structurally tolerant" residues of a polymer. Mutations of these, structurally tolerant residues are less likely to adversely affect desirable properties of a polymer sequence. The invention further provides improved methods for directed evolution wherein the structurally tolerant residues of a polymer are selectively mutated. Computer systems for implementing analytical methods of the invention are also provided.
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公开(公告)号:CA2405520A1
公开(公告)日:2001-11-29
申请号:CA2405520
申请日:2001-05-23
Applicant: CALIFORNIA INST OF TECHN
Inventor: ARNOLD FRANCES H , WANG ZHEN-GANG , VOIGT CHRISTOPHER A , MAYO STEPHEN L
Abstract: The invention relates to improved methods for directed evolution of polymers , including directed evolution of nucleic acids and proteins. Specifically, th e methods of the invention include analytical methods for identifying "crossov er locations" in a polymer. Crossovers at these locations are less likely to disrupt desirable properties of the protein, such as stability or functionality. The invention further provides improved methods for directed evolution wherein the polymer is selectively recombined at the identified "crossover locations". Crossover disruption profiles can be used to identify preferred crossover locations. Structural domains of a biopolymer can also b e identified and analyzed, and domains can be organized into schema. Schema disruption profiles can be calculated, for example based on conformational energy or interatomic distances, and these can be used to identify preferred or candidate crossover locations. Computer systems for implementing analytic al methods of the invention are also provided.
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公开(公告)号:AU2002367636A8
公开(公告)日:2003-11-10
申请号:AU2002367636
申请日:2002-10-25
Applicant: CALIFORNIA INST OF TECHN
Inventor: MAYO STEPHEN L , WANG ZHEN-GANG , VOIGT CHRISTOPHER A , ARNOLD FRANCES H
Abstract: The invention relates to improved methods for directed evolution of polymers, including directed evolution of nucleic acids and proteins. Specifically, the methods of the invention include analytical methods for identifying "structurally tolerant" residues of a polymer. Mutations of these, structurally tolerant residues are less likely to adversely affect desirable properties of a polymer sequence. The invention further provides improved methods for directed evolution wherein the structurally tolerant residues of a polymer are selectively mutated. Computer systems for implementing analytical methods of the invention are also provided.
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公开(公告)号:AU2002365143A1
公开(公告)日:2003-07-15
申请号:AU2002365143
申请日:2002-10-25
Applicant: CALIFORNIA INST OF TECHN
Inventor: MAYO STEPHEN L , VOIGT CHRISTOPHER A , WANG ZHEN-GANG , ARNOLD FRANCES H
IPC: C12N20060101 , C12N15/10 , G01N33/48 , G16B10/00
Abstract: The invention relates to improved methods for directed evolution of polymers, including directed evolution of nucleic acids and proteins. Specifically, the methods of the invention include analytical methods for identifying "crossover locations" in a polymer. Crossovers at these locations are less likely to disrupt desirable properties of the protein, such as stability or functionality. The invention further provides improved methods for directed evolution wherein the polymer is selectively recombined at the identified "crossover locations". Crossover disruption profiles can be used to identify preferred crossover locations. Structural domains of a biopolymer can also be identified and analyzed, and domains can be organized into schema. Schema disruption profiles can be calculated, for example based on conformational energy or interatomic distances, and these can be used to identify preferred or candidate crossover locations. Computer systems for implementing analytical methods of the invention are also provided.
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公开(公告)号:AU2002365143A8
公开(公告)日:2003-07-15
申请号:AU2002365143
申请日:2002-10-25
Applicant: CALIFORNIA INST OF TECHN
Inventor: VOIGT CHRISTOPHER A , ARNOLD FRANCES H , WANG ZHEN-GANG , MAYO STEPHEN L
IPC: C12N20060101 , C12N15/10 , G01N33/48 , G16B10/00
Abstract: The invention relates to improved methods for directed evolution of polymers, including directed evolution of nucleic acids and proteins. Specifically, the methods of the invention include analytical methods for identifying "crossover locations" in a polymer. Crossovers at these locations are less likely to disrupt desirable properties of the protein, such as stability or functionality. The invention further provides improved methods for directed evolution wherein the polymer is selectively recombined at the identified "crossover locations". Crossover disruption profiles can be used to identify preferred crossover locations. Structural domains of a biopolymer can also be identified and analyzed, and domains can be organized into schema. Schema disruption profiles can be calculated, for example based on conformational energy or interatomic distances, and these can be used to identify preferred or candidate crossover locations. Computer systems for implementing analytical methods of the invention are also provided.
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