Methods and Compositions for Species-Specific Kinome Microarrays
    5.
    发明申请
    Methods and Compositions for Species-Specific Kinome Microarrays 审中-公开
    物种特异性Kinome Microarrays的方法和组合

    公开(公告)号:US20140303010A1

    公开(公告)日:2014-10-09

    申请号:US14346490

    申请日:2012-09-21

    Abstract: A method of preparing a species-specific phosphorylation site peptide array for a target organism comprising: a) selecting a plurality of known non-target organism (NTO) phosphorylation site sequences and cognate known NTO phosphorylation polypeptide sequences from one or more NTO, each of the known NTO phosphorylation site sequences comprising at least 5 residues and less than 30 residues; b) identifying a matching target organism (TO) phosphorylation site sequence and cognate TO phosphorylation polypeptide sequence for one or more of the known NTO phosphorylation site sequences; c) determining the matching TO phosphorylation site sequences that correspond to orthologue polypeptides of the cognate known NTO phosphorylation polypeptide sequences; d) selecting the matching TO phosphorylation site sequences determined to correspond to orthologue polypeptides for inclusion on the array; wherein the matching TO phosphorylation site sequences that correspond to orthologue polypeptides are determined by calculating, for each matching phosphorylation site sequence identified in b), a similarity value between the TO phosphorylation polypeptide sequence corresponding to the TO phosphorylation site sequence and a TO polypeptide sequence matching the cognate known NTO polypeptide sequence.

    Abstract translation: 制备靶生物的物种特异性磷酸化位点肽阵列的方法,包括:a)从一个或多个NTO中选择多个已知的非靶生物(NTO)磷酸化位点序列和同源的已知NTO磷酸化多肽序列,每个 已知的NTO磷酸化位点序列包含至少5个残基和少于30个残基; b)鉴定一种或多种已知NTO磷酸化位点序列的匹配靶生物(TO)磷酸化位点序列和同源TO磷酸化多肽序列; c)确定与同源已知的NTO磷酸化多肽序列的直向同源多肽相对应的匹配的TO磷酸化位点序列; d)选择确定为对应于直向同源多肽的匹配的TO磷酸化位点序列以包含在阵列上; 其中对应于直向同源多肽的匹配的TO磷酸化位点序列通过对于b)中鉴定的每个匹配的磷酸化位点序列计算,对应于TO磷酸化位点序列的TO磷酸化多肽序列与匹配的TO多肽序列之间的相似性值 同源已知的NTO多肽序列。

Patent Agency Ranking