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公开(公告)号:CA3042565A1
公开(公告)日:2010-11-04
申请号:CA3042565
申请日:2010-04-30
Applicant: GENOMATICA INC
Inventor: BURGARD ANTHONY P , BURK MARK J , OSTERHOUT ROBIN E , PHARKYA PRITI
IPC: C12N1/21 , C12N9/00 , C12N9/02 , C12N9/04 , C12N9/10 , C12N9/88 , C12N15/52 , C12N15/53 , C12N15/54 , C12N15/60 , C12P7/18
Abstract: A non-naturally occurring microbial organism includes a microbial organism having a 1,3-butanediol (1,3-BDO) pathway having at least one exogenous nucleic acid encoding a 1,3-BDO pathway enzyme expressed in a sufficient amount to produce 1,3-BDO. The pathway includes an enzyme selected from a 2-amino-4-ketopentanoate (AKP) thiolase, an AKP dehydrogenase, a 2-amino-4-hydroxpentanoate aminotransferase, a 2-amino-4-hydroxypentanoate oxidoreductase (deaminating), a 2-oxo-4-hydroxypentanoate decarboxylase, a 3-hydroxybutyraldehyde reductase, an AKP aminotransferase, an AKP oxidoreductase (deaminating), a 2,4-dioxopentanoate decarboxylase, a 3-oxobutyraldehyde reductase (ketone reducing), a 3-oxobutyraldehyde reductase (aldehyde reducing), a 4-hydroxy-2-butanone reductase, an AKP decarboxylase, a 4-aminobutan-2-one aminotransferase, a 4-aminobutan-2-one oxidoreductase (deaminating), a 4-aminobutan-2-one ammonia-lyase, a butenone hydratase, an AKP ammonia-lyase, an acetylacrylate decarboxylase, an acetoacetyl-CoA reductase (CoA-dependent, aldehyde forming), an acetoacetyl-CoA reductase (CoA-dependent alcohol forming), an acetoacetyl-CoA reductase (ketone reducing), a 3-hydroxybutyryl-CoA reductase (aldehyde forming), a 3-hydroxybutyryl-CoA reductase (alcohol forming), a 4-hydroxybutyryl-CoA dehydratase, and a crotonase. A method for producing 1,3-BDO, includes culturing such microbial organisms under conditions and for a sufficient period of time to produce 1,3-BDO.
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公开(公告)号:CA2759994A1
公开(公告)日:2010-11-04
申请号:CA2759994
申请日:2010-04-30
Applicant: GENOMATICA INC
Inventor: BURGARD ANTHONY P , BURK MARK J , OSTERHOUT ROBIN E , PHARKYA PRITI
Abstract: A non-naturally occurring microbial organism includes a microbial organism having a 1,3-butanediol (1,3-BDO) pathway having at least one exogenous nucleic acid encoding a 1,3- BDO pathway enzyme expressed in a sufficient amount to produce 1,3-BDO. The pathway includes an enzyme selected from a 2-amino-4-ketopentanoate (AKP) thiolase, an AKP dehydrogenase, a 2-amino-4-hydroxypentanoate aminotransferase, a 2-amino-4- hydroxypentanoate oxidoreductase (deaminating), a 2-oxo-4-hydroxypentanoate decarboxylase, a 3-hydroxybutyraldehyde reductase, an AKP aminotransferase, an AKP oxidoreductase (deaminating), a 2,4-dioxopentanoate decarboxylase, a 3-oxobutyraldehyde reductase (ketone reducing), a 3-oxobutyraldehyde reductase (aldehyde reducing), a 4-hydroxy-2-butanone reductase, an AKP decarboxylase, a 4-aminobutan-2-one aminotransferase, a 4-aminobutan-2- one oxidoreductase (deaminating), a 4-aminobutan-2-one ammonia-lyase, a butenone hydratase, an AKP ammonia-lyase, an acetylacrylate decarboxylase, an acetoacetyl-CoA reductase (CoA- dependent, aldehyde forming), an acetoacetyl-CoA reductase (CoA-dependent, alcohol forming), an acetoacetyl-CoA reductase (ketone reducing), a 3-hydroxybutyryl-CoA reductase (aldehyde forming), a 3-hydroxybutyryl-CoA reductase (alcohol forming), a 4-hydroxybutyryl- CoA dehydratase, and a crotonase. A method for producing 1,3-BDO, includes culturing such microbial organisms under conditions and for a sufficient period of time to produce 1,3-BDO.
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公开(公告)号:CA2725549A1
公开(公告)日:2009-12-23
申请号:CA2725549
申请日:2009-06-17
Applicant: GENOMATICA INC
Inventor: BURK MARK J , BURGARD ANTHONY P , PHARKYA PRITI
Abstract: A non-naturally occurring eukaryotic or prokaryotic organism includes one or more gene disruptions occurring in genes encoding enzymes imparting increased fumarate, malate or acrylate production in the organism when the gene disruption reduces an activity of the enzyme. The one or more gene disruptions confers increased production of acrylate onto the organism. Organisms that produce acrylate have an acrylate pathway that at least one exogenous nucleic acid encoding an acrylate pathway enzyme expressed in a sufficient amount to produce acrylate, the acrylate pathway comprising a decarboxylase. Methods of producing fumarate, malate or acrylate include culturing these organisms.
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公开(公告)号:CA2995870C
公开(公告)日:2022-11-01
申请号:CA2995870
申请日:2009-03-27
Applicant: GENOMATICA INC
Inventor: BURGARD ANTHONY P , PHARKYA PRITI , OSTERHOUT ROBIN E
IPC: C12N1/21 , C12N1/15 , C12N1/19 , C12N9/00 , C12N9/02 , C12N9/10 , C12N9/88 , C12N15/52 , C12N15/53 , C12N15/54 , C12N15/60 , C12P7/46 , C12P13/00
Abstract: The invention provides a non-naturally occurring microbial organism having an adipate, 6-aminocaproic acid or caprolactam pathway. The microbial organism contains at least one exogenous nucleic acid encoding an enzyme in the respective adipate, 6- aminocaproic acid or caprolactam pathway. The invention additionally provides a method for producing adipate, 6-aminocaproic acid or caprolactam. The method can include culturing an adipate, 6-aminocaproic acid or caprolactam producing microbial organism, where the microbial organism expresses at least one exogenous nucleic acid encoding an adipate, 6-aminocaproic acid or caprolactam pathway enzyme in a sufficient amount to produce the respective product, under conditions and for a sufficient period of time to produce adipate, 6-aminocaproic acid or caprolactam.
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45.
公开(公告)号:PL3077501T3
公开(公告)日:2022-01-31
申请号:PL14868117
申请日:2014-11-25
Applicant: GENOMATICA INC
Inventor: OSTERHOUT ROBIN E , BURGARD ANTHONY P , PHARKYA PRITI , ANDRAE STEFAN
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46.
公开(公告)号:AU2021204276A1
公开(公告)日:2021-07-22
申请号:AU2021204276
申请日:2021-06-24
Applicant: GENOMATICA INC
Inventor: BURK MARK J , BURGARD ANTHONY P , OSTERHOUT ROBIN E , PHARKYA PRITI
Abstract: The invention provides a non-naturally occurring microbial organism having a 6 aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid pathway. The microbial organism contains at least one exogenous nucleic acid encoding an enzyme in the 5 respective 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid pathway. The invention additionally provides a method for producing 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid. The method can include culturing a 6-aminocaproic acid, caprolactam or hexametheylenediamine producing microbial organism, where the microbial organism expresses at least one exogenous nucleic acid encoding a 6-aminocaproic 0 acid, caprolactam, hexametheylenediamine or levulinic acid pathway enzyme in a sufficient amount to produce the respective product, under conditions and for a sufficient period of time to produce 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid.
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公开(公告)号:MA42667A
公开(公告)日:2021-05-05
申请号:MA42667
申请日:2016-08-19
Applicant: GENOMATICA INC
Inventor: BARTON NELSON , CHEN IHSIUNG BRANDON , CULLER STEPHANIE , PHARKYA PRITI , VAN DIEN STEVE
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48.
公开(公告)号:AU2018204702B2
公开(公告)日:2021-03-25
申请号:AU2018204702
申请日:2018-06-28
Applicant: GENOMATICA INC
Inventor: BURK MARK J , BURGARD ANTHONY P , OSTERHOUT ROBIN E , PHARKYA PRITI
Abstract: The invention provides a non-naturally occurring microbial organism having a 6 aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid pathway. The microbial organism contains at least one exogenous nucleic acid encoding an enzyme in the 5 respective 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid pathway. The invention additionally provides a method for producing 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid. The method can include culturing a 6-aminocaproic acid, caprolactam or hexametheylenediamine producing microbial organism, where the microbial organism expresses at least one exogenous nucleic acid encoding a 6-aminocaproic 0 acid, caprolactam, hexametheylenediamine or levulinic acid pathway enzyme in a sufficient amount to produce the respective product, under conditions and for a sufficient period of time to produce 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid.
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49.
公开(公告)号:SI2855687T1
公开(公告)日:2020-09-30
申请号:SI201331751
申请日:2013-06-03
Applicant: GENOMATICA INC
Inventor: BURK MARK J , PHARKYA PRITI , BURGARD ANTHONY P , VAN DIEN STEPHEN J , OSTERHOUT ROBIN E , TRAWICK JOHN D , KUCHINSKAS MICHAEL P , STEER BRIAN
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公开(公告)号:MY175370A
公开(公告)日:2020-06-23
申请号:MYPI2015701936
申请日:2013-12-16
Applicant: GENOMATICA INC
Inventor: BURGARD ANTHONY P , OSTERHOUT ROBIN E , VAN DIEN STEPHEN J , TRACEWELL CARA ANN , PHARKYA PRITI , ANDRAE STEFAN
IPC: A23L27/10 , A23L29/269
Abstract: Provided herein is a non-naturally occurring microbial organism having a methanol metabolic pathway that can enhance the availability of reducing equivalents in the presence of methanol. Such reducing equivalents can be used to increase the product yield of organic compounds produced by the microbial organism, such as adipate, 6-aminocaproate, hexamethylenediamine or caprolactam. Also provided herein are methods for using such an organism to produce adipate, 6-aminocaproate, hexamethylenediamine or caprolactam.
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