СПОСОБ МУЛЬТИПРАЙМЕРНОЙ АМПЛИФИКАЦИИ ДЛЯ ШТРИХОВОГО КОДИРОВАНИЯ ЦЕЛЕВЫХ НУКЛЕИНОВЫХ КИСЛОТ

    公开(公告)号:EA023190B9

    公开(公告)日:2018-03-30

    申请号:EA201171206

    申请日:2010-04-02

    Applicant: FLUIDIGM CORP

    Abstract: Вопределенныхвариантахосуществленияданноеизобретениеобеспечиваетспособыамплификации, вкоторыхнуклеотиднуюметку(и) и, факультативно, штрих-кодовуюнуклеотиднуюпоследовательностьдобавляютк целевымнуклеотиднымпоследовательностям. Вдругихвариантахосуществленияданноеизобретениеобеспечиваетмикрофлюидноеустройство, котороевключаетмножествопервыхлинийвводаи множествовторыхлинийввода. Микрофлюидноеустройствотакжевключаетмножествонаборовпервыхкамери множествонабороввторыхкамер. Каждыйнаборпервыхкамернаходитсяв жидкостнойсвязис однимизмножествапервыхлинийввода. Каждыйнаборвторыхкамернаходитсяв жидкостнойсвязис однимизмножествавторыхлинийввода. Микрофлюидноеустройстводополнительновключаетмножествопервыхплунжерныхпарв жидкостнойсвязис первойчастьюмножествавторыхлинийвводаи множествовторыхплунжерныхпарв жидкостнойсвязис второйчастьюмножествавторыхлинийввода.

    Multi-primer amplification method for barcoding of target nucleic acids

    公开(公告)号:AU2010232439C1

    公开(公告)日:2017-07-13

    申请号:AU2010232439

    申请日:2010-04-02

    Applicant: FLUIDIGM CORP

    Abstract: In certain embodiments, the present invention provides amplification methods in which nucleotide tag(s) and, optionally, a barcode nucleotide sequence are added to target nucleotide sequences. In other embodiments, the present invention provides a microfluidic device that includes a plurality of first input lines and a plurality of second input lines. The microfluidic device also includes a plurality of sets of first chambers and a plurality of sets of second chambers. Each set of first chambers is in fluid communication with one of the plurality of first input lines. Each set of second chambers is in fluid communication with one of the plurality of second input lines. The microfluidic device further includes a plurality of first pump elements in fluid communication with a first portion of the plurality of second input lines and a plurality of second pump elements in fluid communication with a second portion of the plurality of second input lines.

    METHODS, SYSTEMS, AND DEVICES FOR MULTIPLE SINGLE-CELL CAPTURING AND PROCESSING USING MICROFLUIDICS

    公开(公告)号:SG10201608159XA

    公开(公告)日:2016-11-29

    申请号:SG10201608159X

    申请日:2013-02-28

    Applicant: FLUIDIGM CORP

    Abstract: Methods, systems, and devices are described for multiple single-cell capturing and processing utilizing microfluidics. Tools and techniques are provided for capturing, partitioning, and/or manipulating individual cells from a larger population of cells along with generating genetic information and/or reactions related to each individual cell. Different capture configurations may be utilized to capture individual cells and then processing each individual cell in a multi-chamber reaction configuration. Some embodiments may provide for specific target amplification, whole genome amplification, whole transcriptome amplification, real-time PCR preparation, copy number variation, preamplification, mRNA sequencing, and/or haplotyping of the multiple individual cells that have been partitioned from the larger population of cells. Some embodiments may provide for other applications. Some embodiments may be configured for imaging the individual cells or associated reaction products as part of the processing. Reaction products may be harvested and/or further analyzed in some cases.

    MULTI-PRIMER AMPLIFICATION METHOD FOR BARCODING OF TARGET NUCLEIC ACIDS

    公开(公告)号:CA3018687C

    公开(公告)日:2021-07-13

    申请号:CA3018687

    申请日:2010-04-02

    Applicant: FLUIDIGM CORP

    Abstract: In certain embodiments, the present invention provides amplification methods in which nucleotide tag(s) and, optionally, a barcode nucleotide sequence are added to target nucleotide sequences. In other embodiments, the present invention provides a microfluidic device that includes a plurality of first input lines and a plurality of second input lines. The microfluidic device also includes a plurality of sets of first chambers and a plurality of sets of second chambers. Each set of first chambers is in fluid communication with one of the plurality of first input lines. Each set of second chambers is in fluid communication with one of the plurality of second input lines. The microfluidic device further includes a plurality of first pump elements in fluid communication with a first portion of the plurality of second input lines and a plurality of second pump elements in fluid communication with a second portion of the plurality of second input lines.

    SINGLE-PARTICLE ANALYSIS OF PARTICLE POPULATIONS

    公开(公告)号:SG11201407901PA

    公开(公告)日:2015-01-29

    申请号:SG11201407901P

    申请日:2013-05-21

    Applicant: FLUIDIGM CORP

    Abstract: In certain embodiments, the invention provides methods and devices for assaying single particles in a population of particles, wherein at least two parameters are measured for each particle. One or more parameters can be measured while the particles are in the separate reaction volumes. Alternatively or in addition, one or more parameters can be measured in a later analytic step, e.g., where reactions are carried out in the separate reaction volumes and the reaction products are recovered and analyzed. In particular embodiments, one or more parameter measurements are carried out “in parallel,” i.e., essentially simultaneously in the separate reaction volumes.

    MULTI-PRIMER AMPLIFICATION METHOD FOR BARCODING OF TARGET NUCLEIC ACIDS

    公开(公告)号:SG10201402770YA

    公开(公告)日:2014-08-28

    申请号:SG10201402770Y

    申请日:2010-04-02

    Applicant: FLUIDIGM CORP

    Abstract: The present invention provides an elastomer microfluidic device that enables simultaneous amplification of multiple nucleic acid samples with multiple pairs of primers in a matrix format as well as recovery of the products e.g. for next generation sequencing. The flow of samples and reagents as well as the compartmentalization of individual reactions in the multiple channels and chambers is controlled using valves and dilation pumping / volumetric capacitive pumping.

    METHODS, SYSTEMS, AND DEVICES FOR MULTIPLE SINGLE-CELL CAPTURING AND PROCESSING USING MICROFLUIDICS

    公开(公告)号:CA2878787A1

    公开(公告)日:2013-09-06

    申请号:CA2878787

    申请日:2013-02-28

    Applicant: FLUIDIGM CORP

    Abstract: Methods, systems, and devices are described for multiple single-cell capturing and processing utilizing microfluidics. Tools and techniques are provided for capturing, partitioning, and/or manipulating individual cells from a larger population of cells along with generating genetic information and/or reactions related to each individual cell. Different capture configurations may be utilized to capture individual cells and then processing each individual cell in a multi-chamber reaction configuration. Some embodiments may provide for specific target amplification, whole genome amplification, whole transcriptome amplification, real-time PCR preparation, copy number variation, preamplification, mRNA sequencing, and/or haplotyping of the multiple individual cells that have been partitioned from the larger population of cells. Some embodiments may provide for other applications. Some embodiments may be configured for imaging the individual cells or associated reaction products as part of the processing. Reaction products may be harvested and/or further analyzed in some cases.

    MULTI-PRIMER AMPLIFICATION METHOD FOR BARCODING OF TARGET NUCLEIC ACIDS

    公开(公告)号:CA3018687A1

    公开(公告)日:2010-10-07

    申请号:CA3018687

    申请日:2010-04-02

    Applicant: FLUIDIGM CORP

    Abstract: In certain embodiments, the present invention provides amplification methods in which nucleotide tag(s) and, optionally, a barcode nucleotide sequence are added to target nucleotide sequences. In other embodiments, the present invention provides a microfluidic device that includes a plurality of first input lines and a plurality of second input lines. The microfluidic device also includes a plurality of sets of first chambers and a plurality of sets of second chambers. Each set of first chambers is in fluid communication with one of the plurality of first input lines. Each set of second chambers is in fluid communication with one of the plurality of second input lines. The microfluidic device further includes a plurality of first pump elements in fluid communication with a first portion of the plurality of second input lines and a plurality of second pump elements in fluid communication with a second portion of the plurality of second input lines.

    METHODS, SYSTEMS, AND DEVICES FOR MULTIPLE SINGLE-CELL CAPTURING AND PROCESSING USING MICROFLUIDICS

    公开(公告)号:SG11201405235VA

    公开(公告)日:2014-11-27

    申请号:SG11201405235V

    申请日:2013-02-28

    Applicant: FLUIDIGM CORP

    Abstract: Methods, systems, and devices are described for multiple single-cell capturing and processing utilizing microfluidics. Tools and techniques are provided for capturing, partitioning, and/or manipulating individual cells from a larger population of cells along with generating genetic information and/or reactions related to each individual cell. Different capture configurations may be utilized to capture individual cells and then processing each individual cell in a multi-chamber reaction configuration. Some embodiments may provide for specific target amplification, whole genome amplification, whole transcriptome amplification, real-time PCR preparation, copy number variation, preamplification, mRNA sequencing, and/or haplotyping of the multiple individual cells that have been partitioned from the larger population of cells. Some embodiments may provide for other applications. Some embodiments may be configured for imaging the individual cells or associated reaction products as part of the processing. Reaction products may be harvested and/or further analyzed in some cases.

    SINGLE-PARTICLE ANALYSIS OF PARTICLE POPULATIONS

    公开(公告)号:CA2874343A1

    公开(公告)日:2013-11-28

    申请号:CA2874343

    申请日:2013-05-21

    Applicant: FLUIDIGM CORP

    Abstract: In certain embodiments, the invention provides methods and devices for assaying single particles in a population of particles, wherein at least two parameters are measured for each particle. One or more parameters can be measured while the particles are in the separate reaction volumes. Alternatively or in addition, one or more parameters can be measured in a later analytic step, e.g., where reactions are carried out in the separate reaction volumes and the reaction products are recovered and analyzed. In particular embodiments, one or more parameter measurements are carried out "in parallel," i.e., essentially simultaneously in the separate reaction volumes.

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