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公开(公告)号:CA2746632C
公开(公告)日:2020-06-30
申请号:CA2746632
申请日:2009-12-10
Applicant: PACIFIC BIOSCIENCES CALIFORNIA INC
Inventor: FLUSBERG BENJAMIN , TURNER STEPHEN , LEE JESSICA , JIA LEI , KORLACH JONAS , SORENSON JON , WEBSTER DALE , LYLE JOHN , TRAVERS KEVIN , HANES JEREMIAH , PUGLISI JOSEPH
IPC: C12Q1/68 , C12Q1/6809 , C12Q1/6869
Abstract: Methods, compositions, and systems are provided for characterization of modified nucleic acids. In certain preferred embodiments, single molecule sequencing methods are provided for identification of modified nucleotides within nucleic acid sequences. Modifications detectable by the methods provided herein include chemically modified bases, enzymatically modified bases, abasic sites, non-natural bases, secondary structures, and agents bound to a template nucleic acid.
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公开(公告)号:CA2662521C
公开(公告)日:2016-08-09
申请号:CA2662521
申请日:2007-08-31
Applicant: PACIFIC BIOSCIENCES CALIFORNIA INC
Inventor: LUNDQUIST PAUL , TURNER STEPHEN
Abstract: Substrates, systems and methods for analyzing materials that include waveguide arrays disposed upon or within the substrate such that evanescent fields emanating from the waveguides illuminate materials disposed upon or proximal to the surface of the substrate, permitting analysis of such materials. The substrates, systems and methods are used in a variety of analytical operations, including, inter alia, nucleic acid analysis, including hybridization and sequencing analyses, cellular analyses and other molecular analyses.
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公开(公告)号:AU2008251861B2
公开(公告)日:2014-03-20
申请号:AU2008251861
申请日:2008-05-09
Applicant: PACIFIC BIOSCIENCES CALIFORNIA INC
Inventor: ZHONG CHENG-FRANK , ZHAO PEIQIAN , LUNDQUIST PAUL , TURNER STEPHEN , ZACCARIN DENIS
Abstract: Mitigative and remedial approaches to reduction of autofluorescence background noise are applied in analytical systems that rely upon sensitive measurement of fluorescent signals from arrays of fluorescent signal sources. Such systems are for particular use in fluorescence based sequencing by incorporation systems that rely upon small numbers or individual fluorescent molecules in detecting incorporation of nucleotides in primer extension reactions. Systems and methods for analyzing highly multiplexed sample arrays using highly multiplexed, high-density optical systems to illuminate high- density sample arrays and/or provide detection and preferably confocal detection off signals emanating from such high-density arrays. Systems and methods are applied in a variety of different analytical operations, including analysis of biological and biochemical reactions, including nucleic acid synthesis and derivation of sequence information from such synthesis.
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公开(公告)号:AU2008307617B2
公开(公告)日:2013-05-23
申请号:AU2008307617
申请日:2008-09-26
Applicant: PACIFIC BIOSCIENCES CALIFORNIA INC
Inventor: TRAVERS KEVIN , TURNER STEPHEN , HEINER CHERYL
Abstract: Methods of preparing nucleic acid templates and providing the nucleic acid templates to low copy number reaction volumes are provided. Related compositions of nucleic acid templates are also provided.
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公开(公告)号:AU2007261114B2
公开(公告)日:2012-07-12
申请号:AU2007261114
申请日:2007-06-11
Applicant: PACIFIC BIOSCIENCES CALIFORNIA INC
Inventor: FOQUET MATHIEU , ROITMAN DANIEL BERNARDO , TURNER STEPHEN , PELUSO PAUL , OTTO GEOFFREY
Abstract: Substrates, including zero mode waveguide substrates that have been fabricated to provide additional fυ&pgr;clionai elements and/or components including increased volumes for positioning of active surfaces and or components for the mitigation of negative electrochemical properties of the underlying substrates.
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公开(公告)号:MX2010010600A
公开(公告)日:2011-03-30
申请号:MX2010010600
申请日:2009-03-27
Applicant: PACIFIC BIOSCIENCES CALIFORNIA INC
Inventor: TURNER STEPHEN , TRAVERS KEVIN , OTTO GEOFF , HEINER CHERYL , MA CONGCONG
IPC: C12Q1/68
Abstract: Se describen composiciones y métodos para secuenciación de ácido nucleico que incluyen constructos de plantilla que comprenden porciones de doble hebra en constructos parcial o completamente contiguos, para proveer determinación de secuencia redundante por medio de una o ambas de secuenciación de hebras de sentido y anti-sentido y secuenciación iterativamente de todo el constructo múltiples veces. Componentes de secuencia adicionales son también incluidos opcionalmente dentro de tales constructos de plantilla. También se proveen métodos para el uso y preparación de estos constructor, también corno composiciones de secuenciación para su aplicación.
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公开(公告)号:AU2009204461A1
公开(公告)日:2009-07-16
申请号:AU2009204461
申请日:2009-01-09
Applicant: PACIFIC BIOSCIENCES CALIFORNIA INC
Inventor: TURNER STEPHEN , LYLE JOHN , LUONG KHAI , DALAL RAVI , LUNDQUIST PAUL
Abstract: Methods, systems and their components for monitoring fluorescent signals and particularly transient fluorescent signals from reaction mixtures of interest, which methods and systems employ modulated excitation light sources to reduce impacts of excessive illumination on the reaction components or the data obtained therefrom.
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公开(公告)号:CA2633476A1
公开(公告)日:2007-07-05
申请号:CA2633476
申请日:2006-12-21
Applicant: PACIFIC BIOSCIENCES CALIFORNIA INC
Inventor: KORLACH JONAS , HANZEL DAVID , RANK DAVID , PHAM THANG , TURNER STEPHEN , PELUSO PAUL , OTTO GEOFFREY
Abstract: Active surface coupled polymerases, surfaces that include such polymerases, and methods of making and using surface-attached polymerases are provided.
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公开(公告)号:CA2720247C
公开(公告)日:2020-07-14
申请号:CA2720247
申请日:2009-03-30
Applicant: PACIFIC BIOSCIENCES CALIFORNIA INC
Inventor: EID JOHN , TURNER STEPHEN , DALAL RAVI , FLUSBERG BENJAMIN , KORLACH JONAS , LIN STEVEN , FEHR ADRIAN , CHRISTIANS FRED , EMIG ROBIN
Abstract: Methods, compositions and arrays for non-random loading of single analyte molecules into array structures are provided.
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公开(公告)号:CA2719747C
公开(公告)日:2018-02-20
申请号:CA2719747
申请日:2009-03-27
Applicant: PACIFIC BIOSCIENCES CALIFORNIA INC
Inventor: TRAVERS KEVIN , OTTO GEOFF , TURNER STEPHEN , HEINER CHERYL , MA CONGCONG
IPC: C12Q1/68 , C12Q1/6869
Abstract: Compositions and methods for nucleic acid sequencing include template constructs that comprise double stranded portions in a partially or completely contiguous constructs, to provide for redundant sequence determination through one or both of sequencing sense and antisense strands, and iteratively sequencing the entire construct multiple times. Additional sequence components are also optionally included within such template constructs. Methods are also provided for the use and preparation of these constructs as well as sequencing compositions for their application.
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