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公开(公告)号:AT518010T
公开(公告)日:2011-08-15
申请号:AT06848008
申请日:2006-12-21
Applicant: PACIFIC BIOSCIENCES CALIFORNIA
Inventor: HANZEL DAVID , KORLACH JONAS , PELUSO PAUL , OTTO GEOFFREY , PHAM THANG , RANK DAVID , TURNER STEPHEN
Abstract: Active surface coupled polymerases, surfaces that include such polymerases, and methods of making and using surface-attached polymerases are provided.
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公开(公告)号:AU2009292629A1
公开(公告)日:2010-03-25
申请号:AU2009292629
申请日:2009-09-15
Applicant: PACIFIC BIOSCIENCES CALIFORNIA
Inventor: ZHONG CHENG FRANK , LUNDQUIST PAUL , FOQUET MATHIEU , KORLACH JONAS , BAYANDORIAN HOVIG
IPC: G01N21/00 , G01B9/02 , G01N33/483
Abstract: The present invention provides an integrated optical device (2300), comprising:a) a first component (2302) comprising a waveguide (2312) disposed upon or within a substrate and a plurality of nanometer-scale apertures (2308) comprising analyte regions (2310), wherein the analyte regions (2310) are disposed sufficiently proximal to a core of the waveguide (2312) to be illuminated by an evanescent field emanating from the core when optical energy is passed through the waveguide;b) a second component (2304) comprising a microlens array that collects optical energy signals from the analyte regions (2310) and directs the optical energy signals so collected to a detector (2320); andc) a third component (2306) comprising the detector (2320).
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公开(公告)号:AU2009288696A1
公开(公告)日:2010-03-11
申请号:AU2009288696
申请日:2009-09-04
Applicant: PACIFIC BIOSCIENCES CALIFORNIA INC
Inventor: PATEL PRANAV , KORLACH JONAS , BIBILLO ARKADIUSZ , BJORNSON KEITH , HANES JEREMIAH
Abstract: Provided are methods for enhanced sequencing of nucleic acid templates. Also provided are reaction conditions that increase branching fractions during polymerization reactions. Also provided are compositions comprising modified recombinant polymerases that exhibit branching fractions that are higher than the branching fractions of the polymerases from which they were derived. Provided are compositions comprising modified recombinant polymerases that exhibit delayed translocation relative to the polymerases from which they were derived. Also provided are compositions comprising modified recombinant polymerases that exhibit increased nucleotide or nucleotide analog residence time at an active site of the polymerase. Provided are methods for generating polymerases with the aforementioned phenotypes and methods of using such polymerases to sequence a DNA template or make a DNA. Also provided are methods and nucleic acid sequencing systems for determining which labeled nucleotide is incorporated at a site during a template-dependent polymerization reaction.
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公开(公告)号:AU2009223702A1
公开(公告)日:2009-09-17
申请号:AU2009223702
申请日:2009-03-12
Applicant: PACIFIC BIOSCIENCES CALIFORNIA
Inventor: KORLACH JONAS , WEGENER JEFFREY
IPC: G01N33/532 , C12Q1/68 , G01N33/53 , G01N33/533 , G01N33/535
Abstract: Labeled reactant compositions, and particularly labeled nucleic acid reaction compositions that include structural components including double-stranded nucleic acids. In some embodiments, the structural components maintain potentially damaging labeling components sufficiently distal from the reactant portion of the molecule such that damaging effects of the label group on other reaction components, such as enzymes, are reduced, minimized and/or eliminated.
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公开(公告)号:CA2645758A1
公开(公告)日:2007-11-01
申请号:CA2645758
申请日:2007-03-29
Applicant: PACIFIC BIOSCIENCES CALIFORNIA
Inventor: OTTO GEOFF , WEGENER JEFFERY , KORLACH JONAS , RANK DAVID R , XU YUE , PELUSO PAUL , ROITMAN DANIEL , TURNER STEPHEN , LYLE JOHN
Abstract: Methods of producing substrates having selected active chemical regions by employing elements of the substrates in assisting the localization of active chemical groups in desired regions of the substrate. The methods may include optical, chemical and/or mechanical processes for the deposition, removal, activation and/or deactivation of chemical groups in selected regions of the substrate to provide selective active regions of the substrate.
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公开(公告)号:CA2633476A1
公开(公告)日:2007-07-05
申请号:CA2633476
申请日:2006-12-21
Applicant: PACIFIC BIOSCIENCES CALIFORNIA INC
Inventor: KORLACH JONAS , HANZEL DAVID , RANK DAVID , PHAM THANG , TURNER STEPHEN , PELUSO PAUL , OTTO GEOFFREY
Abstract: Active surface coupled polymerases, surfaces that include such polymerases, and methods of making and using surface-attached polymerases are provided.
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公开(公告)号:AU2006213692A1
公开(公告)日:2006-08-17
申请号:AU2006213692
申请日:2006-02-09
Applicant: PACIFIC BIOSCIENCES CALIFORNIA
Inventor: TURNER STEPHEN , KORLACH JONAS
IPC: G01N31/00
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公开(公告)号:WO2010144150A3
公开(公告)日:2011-07-14
申请号:PCT/US2010001690
申请日:2010-06-11
Applicant: PACIFIC BIOSCIENCES CALIFORNIA , KORLACH JONAS , TURNER STEPHEN , FLUSBERG BENJAMIN , CHAISSON MARK , SCHADT ERIC , WEGENER JEFF
Inventor: KORLACH JONAS , TURNER STEPHEN , FLUSBERG BENJAMIN , SCHADT ERIC , WEGENER JEFF
CPC classification number: G01N33/68 , C12Q1/6825 , C12Q1/6827 , C12Q1/6869 , G01N33/542 , G01N33/54306 , G01N33/54373 , G01N33/582 , G01N33/6875 , G01N2333/705 , G01N2458/10 , C12Q2563/107 , C12Q2522/101 , C12Q2561/113 , C12Q2537/164 , C12Q2523/125
Abstract: The present invention is generally directed to compositions, methods, and systems for performing single-molecule, real-time analysis of a variety of different biological reactions, and for determining various characteristics of the different biological reactions. The ability to analyze such reactions provides an opportunity to study those reactions as well as to potentially identify factors and/or approaches for impacting such reactions, e.g., to stimulate, enhance, or inhibit such reactions.
Abstract translation: 本发明一般涉及用于进行各种不同生物反应的单分子实时分析以及用于确定不同生物反应的各种特征的组合物,方法和系统。 分析这些反应的能力提供研究这些反应的机会,并且潜在地鉴定影响这些反应的因素和/或方法,例如刺激,增强或抑制这些反应。
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公开(公告)号:WO2010129019A3
公开(公告)日:2011-03-31
申请号:PCT/US2010001236
申请日:2010-04-26
Applicant: PACIFIC BIOSCIENCES CALIFORNIA , KORLACH JONAS , TURNER STEPHEN , SCHADT ERIC
Inventor: KORLACH JONAS , TURNER STEPHEN , SCHADT ERIC
CPC classification number: C12Q1/6869 , C12Q1/702 , C12Q2565/518 , C12Q2547/101
Abstract: The present invention is generally directed to compositions, methods, and systems for performing single-molecule, real-time analysis of a variety of different biological reactions. The ability to analyze such reactions provides an opportunity to study those reactions as well as to potentially identify factors and/or approaches for impacting such reactions, e.g., to either enhance or inhibit such reactions. In certain preferred embodiments, RNA templates are used in single-molecule real-time sequencing reactions.
Abstract translation: 本发明一般涉及用于进行各种不同生物反应的单分子实时分析的组合物,方法和系统。 分析这些反应的能力提供了研究这些反应以及潜在鉴定影响这些反应的因素和/或方法的机会,例如增强或抑制这种反应。 在某些优选实施方案中,RNA模板用于单分子实时测序反应。
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公开(公告)号:WO2010117470A3
公开(公告)日:2011-03-31
申请号:PCT/US2010001072
申请日:2010-04-09
Applicant: PACIFIC BIOSCIENCES CALIFORNIA , TURNER STEPHEN , FLUSBERG BENJAMIN , FOQUET MATHIEU , CALLEBAUT HANS , SEBRA ROBERT , CHAUDHURI BIDHAN , SORENSON JON , BJORNSON KEITH , FEHR ADRIAN , KORLACH JONAS , EMIG ROBIN
Inventor: TURNER STEPHEN , FLUSBERG BENJAMIN , FOQUET MATHIEU , CALLEBAUT HANS , SEBRA ROBERT , CHAUDHURI BIDHAN , SORENSON JON , BJORNSON KEITH , FEHR ADRIAN , KORLACH JONAS , EMIG ROBIN
CPC classification number: G01N33/48721 , B82Y5/00 , B82Y15/00 , C12Q1/6869 , C12Q1/6874 , C12Q2565/631 , G01N27/447 , G01N27/44791 , C12Q2563/116 , C12Q2527/113
Abstract: The invention relates to devices and methods for nanopore sequencing. The invention includes arrays of nanopores having incorporated electronic circuits, for example, in CMOS. In some cases, the arrays of nanopores comprise resistive openings for isolating the electronic signals for improved sequencing. Methods for controlling translocation of through the nanopore are disclosed.
Abstract translation: 本发明涉及纳米孔测序的装置和方法。 本发明包括纳入电子电路的纳米孔阵列,例如在CMOS中。 在一些情况下,纳米孔阵列包括用于隔离电子信号的电阻开口以改善测序。 公开了通过纳米孔控制易位的方法。
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